Okay, I think the Hard drive recognition problem is because I am making a MS-Dos boot disk and it provides a dos prompt only (though it seems odd that it would not allow me to see other drives)
I replaced the 5700 Ultra with a Radeon 9000 I had lying around (which does not require additional power) and the PC still powered off, so its not the 5700 Ultra card.
Still very lost.
